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An open-source, community-driven analysis and visualization platform for microbial 'omics.

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Pangenomics

An anvi’o pangenome that shows the gene pool of 55 TM7 genomes, a common resident of the human oral cavity. The fi...

Phylogenomics

An anvi’o phylogenomic visualization of a phylum of large and giant viruses. The figure displays a maximum-likelih...

Metabolic profiling of microbial genomes

Identification of high metabolic independence (HMI) genomes and their distribution across gut samples. The phyloge...

Manual binning and curation

The anvi’o interactive interface for manual genome-resolved metagenomics. Panel A describes a metagenomic dataset ...

Visualization of coverage data

Representative coverage plots of metagenomes mapped to pBI143. Each coverage plot shows the read recruitment resul...

Population Genetics

An exploration and visualization of the genomic heterogeneity within Trichodesmium erythraeum populations i...

Structure-Informed Population Genetics

Sequence variants on predicted 3D structures with anvi’o. Though MAG-01 is abundant in both oceans, the Eastern Pa...

Structure-Informed Population Genetics

Anvi’o workflow for structure-informed population genetics. The proposed workflow combines predicted structures an...

Pangenomics

An anvi’o pangenome for Salmonella enterica. The figure at the top shows the maximum-likelihood phylogeny of 50,00...

Genome-resolved metagenomics

Detection of FMT donor genomes in FMT recipients and publicly available gut metagenomes. In both heatmaps, each co...

Genome Refinement and Curation

Refinement of three composite genome bins.

Metapangenomics

The metapangenome of Prochlorococcus. Each one of the 7,385 gene clusters contains one or more genes contributed b...

Metapangenomics

Wolbachia metapangenome in the context of wPip Pel genome synteny. The figure shows the presence–absence of 1,166 ...

“You mend what is broken,” he said. “But who will mend what you become?”